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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1086553_1089829_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1086553 - 1089829
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTCTGTTAATT
Flanking Amino Acid:
WKLENTTAPIRSPALIGCFI
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
84.4
0.85
1
84
34.5
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
57.5
0.31
2
77.64
39

Associated Gene:

Gene:
GALNT18
Ensembl Gene ID:
ENSAPLG00000014984
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015659
939066 - 1154469
215404