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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10869799_10872055_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10869799 - 10872055
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTATCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CCTCTTTGAATT
Flanking Amino Acid:
EFHEDEEPPRKRGRRRKDDK
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
72.7
0.51
1
66
40.6
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
52.3
0.15
1.4
65.05
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006822
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029552
10866463 - 10872816
6354