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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10869799_10872655_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10869799 - 10872655
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
GTATCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CCTCTTTGAATT
Flanking Amino Acid:
RDETYKPHLEKRGRRRKDDK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
72.7
0.51
1
66
40.6
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
52.3
0.15
1.4
65.05
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006822
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007086
10867426 - 10873731
6306