About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10872179_10872655_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10872179 - 10872655
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TGTGTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATGGGAGTAATA
Flanking Amino Acid:
RDETYKPHLEKETPKQRRKA
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.9
0.65
0.9
73.7
36.9
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
38.6
-0.8
2.4
50.05
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006822
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029552
10866463 - 10872816
6354