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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1107207_1112078_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1107207 - 1112078
Intron Length:
4872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
MYSDTVAYGVLQNSLKSDLC
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.1
0.74
0.8
82.4
34
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
GALNT18
Ensembl Gene ID:
ENSAPLG00000014984
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015659
939066 - 1154469
215404