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Intron Name: Anas_platyrhynchos_platyrhynchos_5_11093203_11093744_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11093203 - 11093744

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCTGG

5'SS Class:

major

3'SS Sequence:

CTTTTGGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGTAT

U12 Branch Point Sequence:

GGAGGTGTAACC

Flanking Amino Acid:

VAFASLPYFKGEFCVEAVRE

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

56.7

Major BPS

56.4

0.16

1.6

57.4

49.1

Major PPT

74.5

0.55

0.9

68.2

37.6

Minor 5ss

36.4

-1.5

3.2

46.4

Minor BPS

40.8

-0.7

2.3

48.07

41.8

Associated Gene:

Gene:

VPS51

Ensembl Gene ID:

ENSAPLG00000023418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034659

11091777 - 11096591

4815

ENSAPLT00000027817

11091788 - 11098150

6363