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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11095912_11096330_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11095912 - 11096330
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTACATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CTGTCCCTACAT
Flanking Amino Acid:
DIFSPVEFNKVSVLTGIIKI
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
71.3
0.53
1
61.3
37
Major PPT
67.5
0.39
0.9
57.7
36.9
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
48.5
-0
2.1
69.7
46.8

Associated Gene:

Gene:
VPS51
Ensembl Gene ID:
ENSAPLG00000023418
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034659
11091777 - 11096591
4815
ENSAPLT00000027817
11091788 - 11098150
6363