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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11102886_11102962_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11102886 - 11102962
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTACTCTGACC
Flanking Amino Acid:
CQVASSMQETGLFVGLAVCG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
71.3
0.53
1
61.3
37
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
60.5
0.31
1.7
75.45
34.8

Associated Gene:

Gene:
ACP2
Ensembl Gene ID:
ENSAPLG00000011116
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011597
11101749 - 11109216
7468