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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11103465_11104088_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11103465 - 11104088
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GGTGACTGATTT
Flanking Amino Acid:
QHLKLLAYSAHDTTLVALQM
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.2
43.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
80.7
0.69
0.7
79.1
26.4
Minor 5ss
34
-1.8
2.9
42.1
44.4
Minor BPS
44
-0.3
1.9
59.56
43.5

Associated Gene:

Gene:
ACP2
Ensembl Gene ID:
ENSAPLG00000011116
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011597
11101749 - 11109216
7468