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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11104386_11106412_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11104386 - 11106412
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TCCAGCTGACTA
Flanking Amino Acid:
WSVYDTLFCEQAHKMDLPPW
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
41.3
-0.6
2
48.09
42.9

Associated Gene:

Gene:
ACP2
Ensembl Gene ID:
ENSAPLG00000011116
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011597
11101749 - 11109216
7468