Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11106746_11107082_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11106746 - 11107082

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

CATCTCTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

AGTGACTTACCT

Flanking Amino Acid:

VHTVPESGERLLKFPLSPCP

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

74.9

38.1

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

69.2

0.43

61.2

39.8

Minor 5ss

39.1

-1.2

2.8

40.9

45.3

Minor BPS

52.4

0.15

1.9

72.17

44.3

Associated Gene:

Gene:

ACP2

Ensembl Gene ID:

ENSAPLG00000011116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011597

11101749 - 11109216

7468