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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11107236_11108742_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11107236 - 11108742
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GCGTTACTAACG
Flanking Amino Acid:
FLGAAYRRQEIFIRSTDYDR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
69.7
0.44
1
65.1
36.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
45.6
-0.4
2
49.52
44

Associated Gene:

Gene:
ACP2
Ensembl Gene ID:
ENSAPLG00000011116
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011597
11101749 - 11109216
7468