About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11108830_11108901_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11108830 - 11108901
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCTGCCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAC
U12 Branch Point Sequence:
CCCAGGGTAACG
Flanking Amino Acid:
WPQGFGQLTQVGMRQHWELG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
46.7
-0.2
1.4
47.1
44.6
Major PPT
69.4
0.44
1
61.2
40.1
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
33.2
-1.4
2.6
34.56
46.4

Associated Gene:

Gene:
ACP2
Ensembl Gene ID:
ENSAPLG00000011116
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011597
11101749 - 11109216
7468