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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11115747_11125897_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11115747 - 11125897
Intron Length:
10151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
65.2
39
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
31.8
-2.1
3.7
44.6
44.4
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
NR1H3
Ensembl Gene ID:
ENSAPLG00000010925
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011407
11115472 - 11137035
21564