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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11126146_11128775_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11126146 - 11128775
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATG
Flanking Amino Acid:
SGSENPPEHAENPPLKRKKG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
68.4
0.41
1
65.4
36.3
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
76
0.67
1.2
77.73
33.3

Associated Gene:

Gene:
NR1H3
Ensembl Gene ID:
ENSAPLG00000010925
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011407
11115472 - 11137035
21564