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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11129043_11131946_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11129043 - 11131946
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
ATTTCTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CCATTTCTATTT
Flanking Amino Acid:
KCQEAGMREQYVLSEEQIRL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
64.1
35.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
80.9
0.69
0.8
79
33.5
Minor 5ss
29.5
-2.3
3.1
33.3
41.7
Minor BPS
44.1
-0.3
1.8
55.99
41.3

Associated Gene:

Gene:
NR1H3
Ensembl Gene ID:
ENSAPLG00000010925
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011407
11115472 - 11137035
21564