Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11132156_11132398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11132156 - 11132398

Intron Length:

243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAATAACT

5'SS Class:

major

3'SS Sequence:

TCGATCCCGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TTTCACATATAC

Flanking Amino Acid:

RSFTDRLKVTPWPQVPDPNN

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

71.3

38.4

Major BPS

77.7

0.69

83.3

27.7

Major PPT

63.3

0.3

57.8

38.5

Minor 5ss

36.7

-1.5

44.1

Minor BPS

45.4

-0.3

2.1

63.78

40.7

Associated Gene:

Gene:

NR1H3

Ensembl Gene ID:

ENSAPLG00000010925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011407

11115472 - 11137035

21564