About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11132579_11132971_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11132579 - 11132971
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATCCCTGATCT
Flanking Amino Acid:
IALLKTSTIEVMLLETSRRY
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.4
0.66
0.9
76.2
37.8
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
61.2
0.43
1.8
80.27
40.8

Associated Gene:

Gene:
NR1H3
Ensembl Gene ID:
ENSAPLG00000010925
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011407
11115472 - 11137035
21564