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Intron Name: Anas_platyrhynchos_platyrhynchos_5_11133072_11135465_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11133072 - 11135465

Intron Length:

2394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGTGCAT

5'SS Class:

major

3'SS Sequence:

CTTTTTGTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TGACACTTACCC

Flanking Amino Acid:

SYNRDDFAKAGLQFEFINPI

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.1

58.4

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

84.3

0.77

0.8

80.6

31.4

Minor 5ss

25.6

-2.8

3.4

37.7

47.1

Minor BPS

50.9

0.01

1.8

63.03

41.6

Associated Gene:

Gene:

NR1H3

Ensembl Gene ID:

ENSAPLG00000010925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011407

11115472 - 11137035

21564