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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11135580_11136389_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11135580 - 11136389
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTACTTCTAACC
Flanking Amino Acid:
LLIAINIFSADRPNVQDQSL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.5
0.64
1
76.2
37.8
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
56.7
0.19
1.6
69.11
35.8

Associated Gene:

Gene:
NR1H3
Ensembl Gene ID:
ENSAPLG00000010925
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011407
11115472 - 11137035
21564