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Intron Name: Anas_platyrhynchos_platyrhynchos_5_11136485_11136888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11136485 - 11136888

Intron Length:

404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TCTGACCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TATTTACTAACA

Flanking Amino Acid:

HSYICINRPNDHLMFPRMLM

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

1.3

79.6

34.4

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

74.1

0.54

0.9

66.4

35.4

Minor 5ss

38.6

-1.3

3.3

51.8

38.6

Minor BPS

57.6

0.24

1.9

74.56

36.2

Associated Gene:

Gene:

NR1H3

Ensembl Gene ID:

ENSAPLG00000010925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011407

11115472 - 11137035

21564