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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11156411_11159018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11156411 - 11159018
Intron Length:
2608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GGAGTGTTAATC
Flanking Amino Acid:
KKLGIPRGVQRDTMWRIFTG
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70.6
0.46
0.9
64.8
35.3
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
45.7
-0.3
2.1
51.91
39.6

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747