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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11159793_11160981_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11159793 - 11160981
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCGTTTTTAAGA
Flanking Amino Acid:
LPTCMASAEQLLLAPTPYII
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.9
0.65
0.8
76.7
31.9
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
59.9
0.31
1.6
65.7
41.8

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747