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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11161096_11161831_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11161096 - 11161831
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTGTGCTTTATT
Flanking Amino Acid:
VWLIDLDTNKVIVPTNAESL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
81.8
0.72
0.9
73.7
40.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
58.1
0.34
2.1
79.54
43

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747