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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11163749_11164500_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11163749 - 11164500
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCTTTAT
5'SS Class:
major
3'SS Sequence:
TGTCCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTGCTGAATG
Flanking Amino Acid:
QQQLLTPDNKALASMSLNTQ
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
69.1
37.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
72.7
0.51
1
73.3
37.1
Minor 5ss
37.2
-1.4
3
50.6
45.7
Minor BPS
56.3
0.06
2
65.53
42.4

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747