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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11166093_11167092_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11166093 - 11167092
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGGA
5'SS Class:
major
3'SS Sequence:
CCTGTTGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
KETDSDHTDDSGSDSVDYDD
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
64.5
41.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.3
0.41
1.1
64.3
41.5
Minor 5ss
27
-2.6
3.1
32.5
42.2
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747