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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11175199_11175582_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11175199 - 11175582
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAA
U12 Branch Point Sequence:
TTCTCTCTAAAG
Flanking Amino Acid:
EIAHTHYYNKEPEKRKRSPT
Intron Amino Acid Position:
1067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
78
0.63
1
79
27.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.9
0.05
1.9
65.15
42.7

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747