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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11175790_11183108_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11175790 - 11183108
Intron Length:
7319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TCCCTTTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCCCTTTACT
Flanking Amino Acid:
LKEENFIASIGPEGVKHFDL
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.8
0.6
0.8
76.2
31.3
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
78.6
0.98
1.5
94.35
32.5

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747