Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11185410_11186128_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11185410 - 11186128

Intron Length:

719

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGGATG

5'SS Class:

major

3'SS Sequence:

GTATCGTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

ATTGTCTGACAC

Flanking Amino Acid:

ETNSATSSIFAKSHNLKQSV

Intron Amino Acid Position:

1250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

68.2

42.4

Major BPS

73.8

0.59

0.9

26.8

Major PPT

77.1

0.61

73.2

41.8

Minor 5ss

38.4

-1.3

3.3

54.7

43.7

Minor BPS

45.9

-0.3

1.9

58.34

40.4

Associated Gene:

Gene:

MADD

Ensembl Gene ID:

ENSAPLG00000010515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011038

11152265 - 11204011

51747