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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11190453_11190536_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11190453 - 11190536
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGACA
5'SS Class:
major
3'SS Sequence:
CTTGTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATCTAACA
Flanking Amino Acid:
DTTGDIFFMEVCDDCIVLRS
Intron Amino Acid Position:
1456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.6
40
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.4
0.55
0.9
65.2
41.2
Minor 5ss
30.5
-2.2
3.4
40.2
45.7
Minor BPS
50.7
0.02
1.9
66.54
39.6

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747