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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11192125_11192518_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11192125 - 11192518
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGAT
5'SS Class:
major
3'SS Sequence:
TAACATATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
AAARQQSIKPGPELGGEFPV
Intron Amino Acid Position:
1535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
36.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
65.8
0.36
1
58.2
41.1
Minor 5ss
30.4
-2.2
3.7
46.7
48.6
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747