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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11197406_11202224_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11197406 - 11202224
Intron Length:
4819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
CGTCCGGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGTTTTGTCT
Flanking Amino Acid:
VRGVFVLEEFVPETKEVVSH
Intron Amino Acid Position:
1594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.3
34
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65.6
0.35
1
61.3
40.1
Minor 5ss
36.2
-1.6
2.6
40.8
40
Minor BPS
44.4
-0.3
3.5
77.64
39.7

Associated Gene:

Gene:
MADD
Ensembl Gene ID:
ENSAPLG00000010515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011038
11152265 - 11204011
51747