Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11219808_11220371_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11219808 - 11220371

Intron Length:

564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGAATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

TTTCTTTGAATT

Flanking Amino Acid:

TKNPAYIQKTGTTYKPPCYK

Intron Amino Acid Position:

1137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

1.1

81.6

33.2

Major BPS

74.6

0.61

1.4

34.5

Major PPT

77.6

0.62

0.9

70.6

38.9

Minor 5ss

49.4

-0

2.9

73.9

42.6

Minor BPS

65.5

0.57

1.3

81.72

33.6

Associated Gene:

Gene:

MYBPC3

Ensembl Gene ID:

ENSAPLG00000016373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017104

11216012 - 11272712

56701