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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11221192_11225572_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11221192 - 11225572
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGAACCAGAAGC
Flanking Amino Acid:
DKVAITIQIIDKPGPPQNIK
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.5
0.66
0.8
73.3
31.7
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
44.4
-0.4
2
55.35
41.8

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701