About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11233383_11235372_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11233383 - 11235372
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
SPASQPFMPIAPPSEPTHFT
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87
0.83
0.7
81
30.8
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701