About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11242609_11243577_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11242609 - 11243577
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGGACCATATTT
Flanking Amino Acid:
DERIKISHIGRIHKLTIEDV
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.3
0.7
0.9
72.6
42.2
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
48.1
-0
1.9
66.58
44

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701