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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11248217_11248819_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11248217 - 11248819
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTGTTTCAATA
Flanking Amino Acid:
EKSFTELFVKEPPILITRPL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
77.3
35.9
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
53.8
0.11
1.6
64.92
36.2

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701