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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11255943_11259339_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11255943 - 11259339
Intron Length:
3397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TGTTACTACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTGTTACT
Flanking Amino Acid:
DLDIRAAFRRTTEGHDEAGE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.8
0.49
1
66.3
39.5
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
60.2
0.4
2.3
87.77
37.8

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701