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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11259389_11260210_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11259389 - 11260210
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATGA
5'SS Class:
major
3'SS Sequence:
TTTGTCACATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTTGTTTATT
Flanking Amino Acid:
DSSNFNLTVNEAPLSGDLDI
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
63.8
37
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.8
0.54
1
72.4
37.6
Minor 5ss
36.8
-1.5
3.1
44.6
45.1
Minor BPS
49.3
0.03
2.3
74.73
42.7

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701