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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11261426_11261572_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11261426 - 11261572
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTACA
5'SS Class:
major
3'SS Sequence:
CTTGCCTTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTATTTTAACC
Flanking Amino Acid:
TRPQDGEVTVGGNITFTAKV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
69.4
36.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
62.3
0.28
1.1
61
39.2
Minor 5ss
29.3
-2.4
2.8
30.7
37.5
Minor BPS
63.8
0.41
1.3
65.81
40.5

Associated Gene:

Gene:
MYBPC3
Ensembl Gene ID:
ENSAPLG00000016373
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017104
11216012 - 11272712
56701