Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11285236_11296419_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11285236 - 11296419

Intron Length:

11184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGACCAC

5'SS Class:

major

3'SS Sequence:

CGCTGCAGCCCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCGCAT

U12 Branch Point Sequence:

TGTGCCTACAGT

Flanking Amino Acid:

KNIFLEHKLSCSDEEDIERQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.7

0.25

1.1

49.2

41.7

Major BPS

-0.1

1.4

56.9

40.5

Major PPT

56.4

0.14

46.4

40.3

Minor 5ss

36.3

-1.6

3.4

46.3

44.6

Minor BPS

45.2

-0.3

2.4

67.9

48.7

Associated Gene:

Gene:

SPI1

Ensembl Gene ID:

ENSAPLG00000002423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019117

11284115 - 11300399

16285