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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11296554_11300345_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11296554 - 11300345
Intron Length:
3792

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAAAGAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AGTTCTAAAAAT
Flanking Amino Acid:
SFVAFPLVFRPSEDMVPYES
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.3
53.7
43.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.8
0.83
0.7
81.1
29.4
Minor 5ss
21.9
-3.2
3.9
26.4
37.9
Minor BPS
47.9
-0
2
69.47
41.1

Associated Gene:

Gene:
SPI1
Ensembl Gene ID:
ENSAPLG00000002423
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019117
11284115 - 11300399
16285