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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11340443_11340844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11340443 - 11340844
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGAGTTATAATC
Flanking Amino Acid:
FETGAALRSEAGSRRLKQLL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
47.8
-0.1
1.6
56.01
36.6

Associated Gene:

Gene:
SLC39A13
Ensembl Gene ID:
ENSAPLG00000002504
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002537
11335220 - 11353540
18321
ENSAPLT00000043881
11335220 - 11353540
18321
ENSAPLT00000022007
11335220 - 11353540
18321