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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11340959_11342650_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11340959 - 11342650
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
GTGACATGAAGG
Flanking Amino Acid:
AWAYTCSATTGEGQSFQQQK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
72.8
0.51
0.8
70.5
36.3
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
43.1
-0.6
2
47.32
44.9

Associated Gene:

Gene:
SLC39A13
Ensembl Gene ID:
ENSAPLG00000002504
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002537
11335220 - 11353540
18321
ENSAPLT00000043881
11335220 - 11353540
18321
ENSAPLT00000022007
11335220 - 11353540
18321