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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11344181_11349478_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11344181 - 11349478
Intron Length:
5298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATCA
Flanking Amino Acid:
PSCPTDNRIKISGYLNLLAN
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
70.7
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
SLC39A13
Ensembl Gene ID:
ENSAPLG00000002504
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043881
11335220 - 11353540
18321
ENSAPLT00000022007
11335220 - 11353540
18321
ENSAPLT00000002537
11335220 - 11353540
18321