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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11359624_11363275_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11359624 - 11363275
Intron Length:
3652

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCAACAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAG
U12 Branch Point Sequence:
GTTTCCTTATAG
Flanking Amino Acid:
HWRRKALSTPNLS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.4
59.1
41.7
Major BPS
47
-0.1
1.5
42.9
40.1
Major PPT
82.7
0.74
0.8
77.3
31.6
Minor 5ss
28.5
-2.5
3.9
40.7
45.3
Minor BPS
63.4
0.28
1.8
69.79
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002605
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002617
11359613 - 11366229
6617