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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11363566_11364755_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11363566 - 11364755
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTGCCTTTTCT
Flanking Amino Acid:
TIRQDEWHALHLRRMTAGFI
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
43.6
-0.4
3.7
75.67
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002605
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002617
11359613 - 11366229
6617