About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11364894_11365984_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11364894 - 11365984
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAA
U12 Branch Point Sequence:
CACTGTAGAACC
Flanking Amino Acid:
YVAGLLFLMGGTCCIISLCT
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
85.7
0.8
0.7
81.5
23.5
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
41.8
-0.6
2
48.81
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002605
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002617
11359613 - 11366229
6617