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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11369512_11369730_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11369512 - 11369730
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTGTCTTTCACT
Flanking Amino Acid:
LARACAAQTKATFLKLAGPQ
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.2
0.7
0.8
73.2
36.9
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
71.7
0.76
1.7
87.35
38.8

Associated Gene:

Gene:
PSMC3
Ensembl Gene ID:
ENSAPLG00000008009
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008363
11368172 - 11378784
10613