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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11369875_11369979_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11369875 - 11369979
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATACCA
5'SS Class:
major
3'SS Sequence:
TCTTTTGCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATGTCTTAATA
Flanking Amino Acid:
IGGLDKQIQELVEAIVLPMN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.2
36.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.3
0.8
0.8
80.7
31.4
Minor 5ss
26.9
-2.7
2.8
31.8
42
Minor BPS
71.9
0.68
1.3
75.8
35.8

Associated Gene:

Gene:
PSMC3
Ensembl Gene ID:
ENSAPLG00000008009
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008363
11368172 - 11378784
10613